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page of  Peter Nagy

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Part 1. Before the application of any gradient.



Part 2. After turning on the phase-encoding gradient.



Part 3. After turning off the phase-encoding gradient.



Part 4. After turning on the frequency-encoding gradient.



Part 5. After turning off the frequency-encoding gradient.



Part 6. After turning on the phase-encoding gradient for the second time.



Part 7. After turning off the phase-encoding gradient for the second time.



Part 8. After turning on the frequency-encoding gradient for the second time

This animated figure demonstrates what kind of principles help us locate the signal in the selected slice along the X and Y axes using a specific, calculated example. The animation merely demonstrates how the combined application of a phase- and a frequency-encoding gradient allows determining the source of the signal, since the applied mathematical approach is completely different from and much simpler than the one used in clinical MRI devices.

            There are four pixels in the selected slice, designated by A-D. The length of the vectors is also displayed (A=1; B=0.9; C=0.8; D=0.7). Similar to the previous figure, the vectors represent the macroscopic magnetization rotated to the horizontal plane. Only the precession of these vectors is simulated, and their relaxation is neglected. During the animation the plot above “NMR signal” displays the oscillating NMR signal, i.e. the projection of the sum of macroscopic magnetization vectors on one of the horizontal axes (X or Y). Alternatively, the NMR signal can also be interpreted as the current induced in a coil in the X-Y plane. The plots above this part display the Fourier transforms of the NMR signal. Fourier transformation is a mathematical procedure that determines the contribution of different frequency components to an oscillating signal. The eight Fourier transforms calculated in the eight steps of the simulation are displayed in fields FT1-FT8. It is worth noticing that if the NMR signal is a single-component sine wave, then the Fourier transform only contains a single peak. If, on the other hand, the NMR signal is composed of two different frequency sine waves, the Fourier transform also contains two peaks.

            First, spins precess with identical frequency in a homogeneous magnetic field, and consequently only a single peak appears in the Fourier transform (1). Then, the phase-encoding gradient is turned on, and the spins in pixels on the left and right exhibit different precession frequencies. Consequently, there are two peaks in the Fourier transform (2). After turning off the phase-encoding gradient, the frequencies are again identical for every pixel, but a phase difference persists (3). The phase difference generated between pixels on the left and right is determined and displayed (delta phi1). The Fourier transform again contains only one peak in accordance with identical precession frequencies for all pixels. Afterwards, the frequency-encoding gradient is turned on along the vertical direction, and spins precess with two different frequencies, and there are two peaks in the Fourier transform (4). The two peaks in the Fourier transform are measured and displayed (P1, P2). Peaks P1 and P2 are determined by variables A-B and C-D, respectively, and by the phase difference according to the equations displayed in the lower right corner. The phase-encoding – frequency-encoding pair must be repeated once more (5-8) so that four independent equations can be written for the four unknowns (A-D). At the end of the animation the program calculates A-D by solving the equation set consisting of four equations. The solutions for A-D are identical to the assumed values of the variables.


The simulation is available as a 

- Matlab M-file

- executable (EXE) file, which can be run after installing MCR (Matlab Complier Runtime).